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1

At the dawn of the transcriptomic medicine

Koks, Gea, Pfaff, Abigail L, Bubb, Vivien J, Quinn, John P, Koks, Sulev

Journal:

Experimental Biology and Medicine

Year:

2020

File:

PDF, 204 KB

2020

2

LOSS OF HETEROZYGOSITY AT 5q21 IN NON-SMALL CELL LUNG CANCER: A FREQUENT EVENT BUT WITHOUT EVIDENCE OFAPC MUTATION

COOPER, CINDY A., BUBB, VIVIEN J., SMITHSON, NICOLA, CARTER, ROBERT L., GLEDHILL, SARAH, LAMB, DAVID, WYLLIE, ANDREW H., CAREY, FRANCIS A.

Journal:

The Journal of Pathology

Year:

1996

Language:

english

File:

PDF, 538 KB

english, 1996

3

APC EXPRESSION IN NORMAL HUMAN TISSUES

MIDGLEY, CAROL A., WHITE, SUSAN, HOWITT, RACHEL, SAVE, VICKI, DUNLOP, MALCOLM G., HALL, PETER A., LANE, DAVID P., WYLLIE, ANDREW H., BUBB, VIVIEN J.

Journal:

The Journal of Pathology

Year:

1997

Language:

english

File:

PDF, 3.80 MB

english, 1997

4

THE PATTERN OF K-rasMUTATION IN PULMONARY ADENOCARCINOMA DEFINES A NEW PATHWAY OF TUMOUR DEVELOPMENT IN THE HUMAN LUNG

COOPER, CINDY A., CAREY, FRANCIS A., BUBB, VIVIEN J., LAMB, DAVID, KERR, KEITH M., WYLLIE, ANDREW H.

Journal:

The Journal of Pathology

Year:

1997

Language:

english

File:

PDF, 512 KB

english, 1997

5

Germline APC mutation (Gln1317) in a cancer-prone family that does not result in familial adenomatous polyposis

Susan White, Vivien J. Bubb, Andrew H. Wyllie

Journal:

Genes, Chromosomes and Cancer

Year:

1996

Language:

english

File:

PDF, 658 KB

english, 1996

6

Evidence for an age-related influence of microsatellite instability on colorectal cancer survival

Susan M. Farrington, Aileen J. McKinley, Andrew D. Carothers, Christopher Cunningham, Vivien J. Bubb, Linda Sharp, Andrew H. Wyllie, Malcolm G. Dunlop

Journal:

International Journal of Cancer

Year:

2002

Language:

english

File:

PDF, 123 KB

english, 2002

7

An evolutionary conserved region (ECR) in the human dopamine receptor D4 gene supports reporter gene expression in primary cultures derived from the rat cortex

Ursula M Paredes, Vivien J Bubb, Kate Haddley, Gabriele A Macho, John P Quinn

Journal:

BMC Neuroscience

Year:

2011

Language:

english

File:

PDF, 1.91 MB

english, 2011

8

Evidence of Postnatal Neurogenesis in Dorsal Root Ganglion: Role of Nitric Oxide and Neuronal Restrictive Silencer Transcription Factor

Daleep K. Arora, Anna S. Cosgrave, Mark R. Howard, Vivien Bubb, John P. Quinn, Thimmasettappa Thippeswamy

Journal:

Journal of Molecular Neuroscience

Year:

2007

Language:

english

File:

PDF, 333 KB

english, 2007

9

Lithium Chloride Regulation of the Substance P Encoding Preprotachykinin A, Tac1 Gene in Rat Hippocampal Primary Cells

Kate Haddley, Eleanor Mary Spencer, Sylvia Argiroula Vasiliou, Mark Howard, Thimmasettappa Thippeswamy, Vivien Jill Bubb, John P. Quinn

Journal:

Journal of Molecular Neuroscience

Year:

2011

Language:

english

File:

PDF, 222 KB

english, 2011

10

Distinct Gene Expression Profiles Directed by the Isoforms of the Transcription Factor Neuron-Restrictive Silencer Factor in Human SK-N-AS Neuroblastoma Cells

Stuart G. Gillies, Kate Haddley, Sylvia A. Vasiliou, Gregory M. Jacobson, Bengt von Mentzer, Vivien J. Bubb, John P. Quinn

Journal:

Journal of Molecular Neuroscience

Year:

2011

Language:

english

File:

PDF, 734 KB

english, 2011

11

Activity-Dependent Neuroprotective Protein Modulates Its Own Gene Expression

Moutasem S. Aboonq, Sylvia A. Vasiliou, Kate Haddley, John P. Quinn, Vivien J. Bubb

Journal:

Journal of Molecular Neuroscience

Year:

2012

Language:

english

File:

PDF, 229 KB

english, 2012

12

The SLC6A4 VNTR genotype determines transcription factor binding and epigenetic variation of this gene in response to cocaine in vitro

Sylvia A. Vasiliou, Fahad R. Ali, Kate Haddley, M. Cristina Cardoso, Vivien J. Bubb, John P. Quinn

Journal:

Addiction Biology

Year:

2012

Language:

english

File:

PDF, 879 KB

english, 2012

13

Combinatorial interaction between two human serotonin transporter gene variable number tandem repeats and their regulation by CTCF

Fahad R. Ali, Sylvia A. Vasiliou, Kate Haddley, Ursula M. Paredes, Julian C. Roberts, Fabio Miyajima, Elena Klenova, Vivien J. Bubb, John P. Quinn

Journal:

Journal of Neurochemistry

Year:

2010

Language:

english

File:

PDF, 556 KB

english, 2010

14

Bovine papillomavirus E5 oncoprotein binds to the 16K component of vacuolar H+-ATPases

Goldstein, David J., Fmbow, Malcolm E., Andresson, Thorkell, McLean, Pauline, Smith, Ken, Bubb, Vivien, Schlegel, Richard

Journal:

Year:

1991

File:

PDF, 503 KB

1991

15

Dysregulated expression of β-catenin marks early neoplastic change in Apc mutant mice, but not all lesions arising in Msh2 deficient mice

Kongkanuntn, Rungtiva, Bubb, Vivien J, Sansom, Owen J, Wyllie, Andrew H, Harrison, David J, Clarke, Alan R

Journal:

Year:

1999

Language:

english

File:

PDF, 1.19 MB

english, 1999

16

Intronic Tandem Repeat in the Serotonin Transporter Gene in Old World Monkeys: a New Transcriptional Regulator?

Ursula M. Paredes, Vivien J. Bubb, Kate Haddley, Gabriele A. Macho, John P. Quinn

Journal:

Journal of Molecular Neuroscience

Year:

2012

Language:

english

File:

PDF, 258 KB

english, 2012

17

A regulatory domain spanning the repeat sequence RE1 from herpes simplex virus type 1 has cell specific differential functions in trigeminal neurons and fibroblasts

Hannah C. Stevens, Carolyn Fiskerstrand, Vivien J. Bubb, Robert Dalziel, John P. Quinn

Journal:

Year:

2009

Language:

english

File:

PDF, 374 KB

english, 2009

18

Regulation of activity-dependent neuroprotective protein (ADNP) by the NO-cGMP pathway in the hippocampus during kainic acid-induced seizure

Anna S. Cosgrave, Jennifer S. McKay, Vivien Bubb, Richard Morris, John P. Quinn, Thimmasettappa Thippeswamy

Journal:

Neurobiology of Disease

Year:

2008

Language:

english

File:

PDF, 1.80 MB

english, 2008

19

DNA sequence of the HPV-16 E5 ORF and the structural conservation of its encoded protein

Vivien Bubb, Dennis J. McCance, Richard Schlegel

Journal:

Year:

1988

Language:

english

File:

PDF, 525 KB

english, 1988

20

CTCF and Sp1 interact with the Murine gammaherpesvirus 68 internal repeat elements

Stevens, Hannah C., Cham, Kevin S-W, Hughes, David J., Sun, Ren, Sample, Jeffery T., Bubb, Vivien J., Stewart, James P., Quinn, John P.

Journal:

Year:

2012

Language:

english

File:

PDF, 1.41 MB

english, 2012

21

Characterisation of the potential function of SVA retrotransposons to modulate gene expression patterns

Abigail L Savage, Vivien J Bubb, Gerome Breen, John P Quinn

Journal:

BMC Evolutionary Biology

Year:

2013

Language:

english

File:

PDF, 300 KB

english, 2013

22

Allele-specific expression of the serotonin transporter and its transcription factors following lamotrigine treatment in vitro

D'Souza, Ursula M., Powell-Smith, Georgia, Haddley, Kate, Powell, Timothy R., Bubb, Vivien J., Price, Tom, McGuffin, Peter, Quinn, John P., Farmer, Anne E.

Journal:

American Journal of Medical Genetics Part B: Neuropsychiatric Genetics

Year:

2013

Language:

english

File:

PDF, 567 KB

english, 2013

23

Polymorphic variation as a driver of differential neuropeptide gene expression

Quinn, John P., Warburton, Alix, Myers, Paul, Savage, Abigail L., Bubb, Vivien J.

Journal:

Year:

2013

Language:

english

File:

PDF, 344 KB

english, 2013

24

Molecular signatures of mood stabilisers highlight the role of the transcription factor REST/NRSF

Warburton, Alix, Savage, Abigail L., Myers, Paul, Peeney, David, Bubb, Vivien J., Quinn, John P.

Journal:

Journal of Affective Disorders

Year:

2015

Language:

english

File:

PDF, 1.21 MB

english, 2015

25

Characterisation of multiple regulatory domains spanning the major transcriptional start site of the FUS gene, a candidate gene for motor neurone disease

Khursheed, Kejhal, Wilm, Thomas P., Cashman, Christine, Quinn, John P., Bubb, Vivien J., Moss, Diana J.

Journal:

Year:

2015

Language:

english

File:

PDF, 1.54 MB

english, 2015

26

SVA retrotransposons as modulators of gene expression

Quinn, John P, Bubb, Vivien J

Journal:

Mobile Genetic Elements

Year:

2014

Language:

english

File:

PDF, 254 KB

english, 2014

27

Loss of heterozygosity of MCC is not associated with mutation of the retained allele in sporadic colorectal cancer

Curtis, Lucy J., Bubb, Vivien J., Gledhlll, Sarah, Morris, Robert G., Bird, Colin C., Wyllle, Andrew H.

Journal:

Human Molecular Genetics

Year:

1994

Language:

english

File:

PDF, 1.89 MB

english, 1994

28

A GWAS SNP for Schizophrenia Is Linked to the Internal MIR137 Promoter and Supports Differential Allele-Specific Expression

Warburton, Alix, Breen, Gerome, Bubb, Vivien J., Quinn, John P.

Journal:

Schizophrenia Bulletin

Year:

2015

Language:

english

File:

PDF, 530 KB

english, 2015

29

Identification and Potential Regulatory Properties of Evolutionary Conserved Regions (ECRs) at the Schizophrenia-Associated MIR137 Locus

Gianfrancesco, Olympia, Griffiths, Daniel, Myers, Paul, Collier, David A., Bubb, Vivien J., Quinn, John P.

Journal:

Journal of Molecular Neuroscience

Year:

2016

Language:

english

File:

PDF, 2.05 MB

english, 2016

30

Novel brain expressed RNA identified at the MIR137 schizophrenia-associated locus

Gianfrancesco, Olympia, Warburton, Alix, Collier, David A., Bubb, Vivien J., Quinn, John P.

Journal:

Schizophrenia Research

Year:

2016

Language:

english

File:

PDF, 1.80 MB

english, 2016

31

SVA retrotransposons as potential modulators of neuropeptide gene expression

Gianfrancesco, Olympia, Bubb, Vivien J., Quinn, John P.

Journal:

Year:

2016

Language:

english

File:

PDF, 922 KB

english, 2016

32

Regulatory characterisation of the schizophrenia-associated CACNA1C proximal promoter and the potential role for the transcription factor EZH2 in schizophrenia aetiology

Billingsley, Kimberley J., Manca, Maurizio, Gianfrancesco, Olympia, Collier, David A., Sharp, Helen, Bubb, Vivien J., Quinn, John P.

Journal:

Schizophrenia Research

Year:

2018

Language:

english

File:

PDF, 1.19 MB

english, 2018

33

The Regulation of Monoamine Oxidase A Gene Expression by Distinct Variable Number Tandem Repeats

Manca, Maurizio, Pessoa, Veridiana, Lopez, Ana Illera, Harrison, Patrick T., Miyajima, Fabio, Sharp, Helen, Pickles, Andrew, Hill, Jonathan, Murgatroyd, Chris, Bubb, Vivien J., Quinn, John P.

Journal:

Journal of Molecular Neuroscience

Year:

2018

Language:

english

File:

PDF, 1.54 MB

english, 2018

34

Non-coding genetic variation shaping mental health

Quinn, John P, Savage, Abigail, Bubb, Vivien J

Journal:

Current Opinion in Psychology

Year:

2018

Language:

english

File:

PDF, 489 KB

english, 2018

35

Retrotransposons in the development and progression of amyotrophic lateral sclerosis

Savage, Abigail L, Schumann, Gerald G, Breen, Gerome, Bubb, Vivien J, Al-Chalabi, Ammar, Quinn, John P

Journal:

Journal of Neurology Neurosurgery & Psychiatry

Year:

2018

Language:

english

File:

PDF, 2.56 MB

english, 2018

36

Potential impact of primate-specific SVA retrotransposons during the evolution of human cognitive function

Vasieva, Olga, Cetiner, Sultan, Savage, Abigail, Schumann, Gerald G., Bubb, Vivien J., Quinn, John P.

Journal:

Trends in Evolutionary Biology

Year:

2017

Language:

english

File:

PDF, 831 KB

english, 2017

37

Treating the “E” in “G × E”: Trauma-Informed Approaches and Psychological Therapy Interventions in Psychosis

Gianfrancesco, Olympia, Bubb, Vivien J., Quinn, John P.

Journal:

Frontiers in Psychiatry

Year:

2019

File:

PDF, 1.20 MB

2019

38

Mitochondria function associated genes contribute to Parkinson’s Disease risk and later age at onset

Billingsley, Kimberley J., Barbosa, Ines A., Bandrés-Ciga, Sara, Quinn, John P., Bubb, Vivien J., Deshpande, Charu, Botia, Juan A., Reynolds, Regina H., Zhang, David, Simpson, Michael A., Blauwendraat

Journal:

npj Parkinson s Disease

Year:

2019

Language:

english

File:

PDF, 1.19 MB

english, 2019

39

Caspase-mediated cleavage of APC results in an amino-terminal fragment with an intact armadillo repeat domain

WEBB, STEPHANIE JOHNSON, NICHOLSON, DONALD, BUBB, VIVIEN J., WYLLIE, ANDREW H.

Journal:

The FASEB Journal

Year:

1999

Language:

english

File:

PDF, 400 KB

english, 1999

40

The Role of SINE-VNTR-Alu (SVA) Retrotransposons in Shaping the Human Genome

Gianfrancesco, Olympia, Geary, Bethany, Savage, Abigail L., Billingsley, Kimberley J., Bubb, Vivien J., Quinn, John P.

Journal:

International Journal of Molecular Sciences

Year:

2019

Language:

english

File:

PDF, 4.28 MB

english, 2019

41

The Role of SINE-VNTR-Alu (SVA) Retrotransposons in Shaping the Human Genome

Gianfrancesco, Olympia, Geary, Bethany, Savage, Abigail L., Billingsley, Kimberley J., Bubb, Vivien J., Quinn, John P.

Journal:

International Journal of Molecular Sciences

Year:

2019

File:

PDF, 4.28 MB

2019

42

Highlight article: Genetic interaction between two VNTRs in the MAOA gene is associated with the nicotine dependence

KÃµks, Gea, Prans, Ele, Ho, Xuan D, Duy, Binh H, Tran, Ha DT, Ngo, Ngoc BT, Hoang, Linh NN, Tran, Hue MT, Bubb, Vivien J, Quinn, John P, KÃµks, Sulev

Journal:

Experimental Biology and Medicine

Year:

2020

File:

PDF, 307 KB

2020

43

An Increased Burden of Highly Active Retrotransposition Competent L1s Is Associated with Parkinsonâs Disease Risk and Progression in the PPMI Cohort

Pfaff, Abigail L., Bubb, Vivien J., Quinn, John P., Koks, Sulev

Journal:

International Journal of Molecular Sciences

Year:

2020

File:

PDF, 1.05 MB

2020

44

Frequency and methylation status of selected retrotransposition competent L1 loci in amyotrophic lateral sclerosis

Savage, Abigail L., Lopez, Ana Illera, Iacoangeli, Alfredo, Bubb, Vivien J., Smith, Bradley, Troakes, Claire, Alahmady, Nada, Koks, Sulev, Schumann, Gerald G., Al-Chalabi, Ammar, Quinn, John P.

Journal:

Molecular Brain

Year:

2020

File:

PDF, 1.55 MB

2020

45

A SINE-VNTR-Alu in the LRIG2 Promoter Is Associated with Gene Expression at the Locus

Hall, Ashley, Moore, Anni K., Hernandez, Dena G., Billingsley, Kimberley J., Bubb, Vivien J., Quinn, John P.

Journal:

International Journal of Molecular Sciences

Year:

2020

File:

PDF, 2.91 MB

2020